ShinyMultiome.UiO is a user-friendly, integrative, open-source web app for single cell multiome data. ShinyMultiome.UiO use R Shiny framework for visualization of jointly analyzed chromatin accessibility (scATAC-seq) and gene expression (scRNA-seq) data using Signac (Stuart et al., 2021).
The Seurat objects is saved as RDS file along with Fragment.tsv.gz and indexed Fragment.tsv.gz.tbi are used for input in ShinyMultiome.
ShinyMultiome.UiO software is developed at Chromatin Biology Lab at University of Oslo, as an open-source project mainly under the GPL license version 3 (see source code for details).
For demonstration, we utilized the 10X Genomics 10k Human PBMCs, Multiome v1.0, Chromium X 10XGenomics
If ShinyMultiome.UiO in any way helps you in visualizing and sharing your research work such that it warrants a citation, please cite the ShinyMultiome.UiO preprint in BioRXiv or the final publication.